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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PACS1, Phosphofurin acidic cluster sorting protein 1
Sequence ID:NM_018026
Entrez Gene ID:55690
Ensembl ID:ENSG00000175115

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.1-q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 65984232 - 66012213

 Exon Info From UCSC:
NM_018026

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502170Full LengthBC010096phosphofurin acidic cluster sorting protein 1
4130626Full LengthBC052577phosphofurin acidic cluster sorting protein 1
2924227IncompleteBC003173phosphofurin acidic cluster sorting protein 1
4134919IncompleteBC009936phosphofurin acidic cluster sorting protein 1
5479132IncompleteBC042909phosphofurin acidic cluster sorting protein 1
6501760IncompleteBC055288phosphofurin acidic cluster sorting protein 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018026 NP_060496 Q6VY07  

Related Sequences

 
mRNAGenPeptSwissProt
BC003173 AAH03173 Q6VY07
BC009936 AAH09936 Q6VY07
BC010096 AAH10096 Q6VY07
BC052577 AAH52577 Q6VY07
BC055288 AAH55288 Q6VY07
AY320283 AAQ67682 Q6VY07
AB033001 BAA86489 Q6VY07
AK001071 BAA91491 Q6VY07
AK056361 BAB71164 Q6VY07
AK096644 BAC04831 Q6VY07
AK293966 BAG57338 B4DF77
AL137271 CAB70669 Q9NTH2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PACS1 NP_060496 R.norvegicus Pacs1 171444   NP_599233 98
M.musculus Pacs1 107975 Gene Info NP_694769 98
C.elegans tag-232 179304   NP_505387 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)