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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GCFC1, GC-rich sequence DNA-binding factor 1
Sequence ID:NM_016631
NM_013329
Entrez Gene ID:94104
Ensembl ID:ENSG00000159086

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 34113703 - 34127583

 Exon Info From UCSC:
NM_016631
NM_013329

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4860678IncompleteBC084542chromosome 21 open reading frame 66
100061553BC156214chromosome 21 open reading frame 66

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037461  NP_057715  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013329 NP_037461   GCFC
NM_016631 NP_057715 Q9Y5B6 GCFC

Related Sequences

 
mRNAGenPeptSwissProt
AF153208 AAD34617 Q9Y5B6
AF208862 AAF64276 Q9NZD7
AF231920 AAF72944 Q9Y5B6
BC030539 AAH30539 Q8N6E6
BC084542 AAH84542 Q5XGA1
BC156214 AAI56215  
AY033903 AAK68721 Q9Y5B6
AY033904 AAK68722 Q9Y5B6
AY033905 AAK68723 Q9Y5B6
AY033906 AAK68724 Q9Y5B6
DQ891624 ABM82550  
DQ894815 ABM85741  
AK075042 BAC11369 Q8N2J1
AK093291 BAG52682 B3KSC0
AK128513 BAG54687 B3KY25
AJ279080 CAC40813 Q9Y5B6
AJ279081 CAC40814 Q9Y5B6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GCFC1 NP_057715 R.norvegicus Gcfc1 681004   XP_001057305 96
M.musculus Gcfc1 67367 Gene Info NP_080386 95
D.melanogaster CG1965 40842   NP_649689 38
A.gambiae AgaP_AGAP002035 1281079   XP_321016 35
C.elegans F43G9.12 172662   NP_492341 31
A.thaliana ILP1 830755   NP_196472 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)