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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLINT1, clathrin interactor 1
Sequence ID:NM_001195555
NM_001195556
NM_014666
RefSeqGene ID:NG_027820
Entrez Gene ID:9685
Ensembl ID:ENSG00000113282

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 157214653 - 157285978


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3831533Full LengthBC004467clathrin interactor 1
3881669IncompleteBC013091clathrin interactor 1
5218105IncompleteBC030264clathrin interactor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055481  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195555 NP_001182484    
NM_001195556 NP_001182485    
NM_014666 NP_055481 Q14677 ENTH

Related Sequences

 
mRNAGenPeptSwissProt
BC004467 AAH04467 Q14677
BC013091 AAH13091 Q14677
AF434813 AAL30768 Q14677
D79993 BAA11488 Q14677
AK092765 BAC03971 Q14677
AK300257 BAH13244 Q14677
BK000414 DAA00062 Q14677

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLINT1 NP_055481 R.norvegicus Clint1 360515   NP_001002022 97
M.musculus Clint1 216705 Gene Info NP_001038985 95
A.gambiae AgaP_AGAP004504 1274651   XP_313803 65
D.melanogaster lqfR 42632   NP_732734 48
N.crassa NCU00725 3880528   XP_964378 43
C.elegans rsd-3 181358   NP_509973 38
A.thaliana AT5G11710 831043   NP_196732 35
S.cerevisiae ENT3 853589   NP_012659 35
S.pombe SPCC794.11c 2539421   NP_587759 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)