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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX4, SRY (sex determining region Y)-box 4
Sequence ID:NM_003107
RefSeqGene ID:NG_029166
Entrez Gene ID:6659
Ensembl ID:ENSG00000124766

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 21593981 - 21594722

NM_003107 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
148762159397121598846

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6584346Full LengthBC072668SRY (sex determining region Y)-box 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003098  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003107 NP_003098 Q06945 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC072668 AAH72668 Q06945
EU446655 ABZ92184  
X65661 CAA46612 Q06945
X70683 CAA50018 Q06945

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX4 NP_003098 M.musculus Sox4 20677 Gene Info NP_033264 88
R.norvegicus Sox4 364712   XP_344595 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)