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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ITGB1, integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
Sequence ID:NM_002211
NM_033668
NM_133376
NM_033666
NM_033667
NM_033669
RefSeqGene ID:NG_029012
Entrez Gene ID:3688
Ensembl ID:ENSG00000150093

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 33189929 - 33247145

 Exon Info From UCSC:
NM_002211
NM_033668
NM_133376
NM_033666
NM_033667
NM_033669

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3924411Full LengthBC020057integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
40033152IncompleteBC113901integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002202  NP_596867  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002211 NP_002202 P05556 Integrin_beta
Integrin_B_tail
EGF_2
NM_033668 NP_391988    
NM_133376 NP_596867   Integrin_beta
Integrin_B_tail
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
M34189 AAA59182 P05556
M84237 AAA74402 P05556
M84237 AAA74403 P05556
U28252 AAA81366 P05556
BC020057 AAH20057 P05556
BC113901 AAI13902 P05556
DQ891069 ABM81995  
DQ894251 ABM85177  
AK291697 BAF84386 P05556
BX537407 CAD97649 P05556
AM393197 CAL38075  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ITGB1 NP_391988 M.musculus Itgb1 16412 Gene Info NP_034708 91
R.norvegicus Itgb1 24511   NP_058718 91
A.gambiae INTB 1272405   XP_311354 47
D.melanogaster mys 44885   NP_524793 47
C.elegans pat-3 175504   NP_497787 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta