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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMARCE1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Sequence ID:NM_003079
RefSeqGene ID:NG_032163
Entrez Gene ID:6605
Ensembl ID:ENSG00000073584

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 38784975 - 38804100

 Exon Info From UCSC:
NM_003079

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4076036Full LengthBC007082SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
4287132Full LengthBC011017SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
4540040Full LengthBC063700SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
6277521IncompleteBC069196SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
6471369IncompleteBC047731SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003070  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003079 NP_003070 Q969G3 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC007082 AAH07082 Q969G3
BC011017 AAH11017 Q969G3
BC063700 AAH63700 Q969G3
BT007176 AAP35840 Q969G3
DQ890712 ABM81638  
DQ893481 ABM84407  
DQ893894 ABM84820  
DQ896382 ABM87381  
EU327017 ACA81391 C0IMW4
EU327018 ACA81392 C0IMW5
EU327019 ACA81393 B4DFR4
EU327020 ACA81394 C0IMW7
EU327021 ACA81395 C0IMW8
AK001532 BAG50933 Q969G3
AK095047 BAG52975 Q969G3
AK294218 BAG57525 B4DFR4
AK294666 BAG57834 B4DGM3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCE1 NP_003070 M.musculus Smarce1 57376 Gene Info NP_065643 97
R.norvegicus Smarce1 303518   NP_001020164 97
D.melanogaster dalao 31846   NP_572530 49
A.gambiae AgaP_AGAP001994 1281127   XP_321065 46
C.elegans Y71H2AM.17 175393   NP_497613 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta