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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PRPF40A, PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Sequence ID:NM_017892
Entrez Gene ID:55660
Ensembl ID:ENSG00000196504

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 153529078 - 153573960

 Exon Info From UCSC:
NM_017892

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3356968IncompleteBC000273PRP40 pre-mRNA processing factor 40 homolog A (yeast)
4026200IncompleteBC011788PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
4343048IncompleteBC027178PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
4733897IncompleteBC029414PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017892 NP_060362    
NM_152522 NP_689735 Q8N6S5  

Related Sequences

 
mRNAGenPeptSwissProt
U70667 AAB93495 O75400
AF049523 AAC27501 O75400
AF049524 AAC27502 O75400
AF049528 AAC27506 O75400
AF155096 AAD42862 O75400
AF151059 AAF36145 O75400
Q4ZG51
BC011788 AAH11788 O75400
BC027178 AAH27178 O75400
BC028741 AAH28741 Q8N6S5
BC029414 AAH29414 Q05C41
BC070140 AAH70140 Q8N6S5
AF530059 AAQ09943 Q8N6S5
HQ447347 ADQ31833  
AK000592 BAA91277 O75400
AK024810 BAB15016 O75400
AK315187 BAG37627 Q4ZG51
AK315657 BAG38023 Q8N6S5
AK023109 BAG51157 B3KMZ5
AK298547 BAG60744 B4DPY2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRPF40A NP_060362 M.musculus Prpf40a 56194 Gene Info NP_061255 97
R.norvegicus Prpf40a 295607   NP_001099950 97
A.gambiae AgaP_AGAP008263 1277723   XP_317209 48
D.melanogaster CG3542 33513   NP_608738 46
C.elegans ZK1098.1 176343   NP_499098 39
A.thaliana PRP40B 821504   NP_188601 31
N.crassa NCU03062 3880019   XP_963870 31
A.thaliana PRP40A 841057   NP_175113 31
S.pombe usp104 2543409   NP_594966 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)