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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHD1, chromodomain helicase DNA binding protein 1
Sequence ID:NM_001270
Entrez Gene ID:1105
Ensembl ID:ENSG00000153922

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q15-q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 98191448 - 98262240

 Exon Info From UCSC:
NM_001270

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125685Full LengthBC117134chromodomain helicase DNA binding protein 1
6617223IncompleteBC054860chromodomain helicase DNA binding protein 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001270 NP_001261 O14646 EC 3.6.4.12  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF006513 AAB87381 O14646 EC 3.6.4.12
BC054860 AAH54860 Q7Z4M7  
BC117134 AAI17135 O14646 EC 3.6.4.12
AK094871 BAG52945 B3KT33  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHD1 NP_001261 M.musculus Chd1 12648 Gene Info NP_031716 96
R.norvegicus Chd1 308215   NP_001100935 95
C.elegans H06O01.2 172432   NP_491994 48
A.thaliana CHR5 815823   NP_178970 41
N.crassa NCU03060 3880017   XP_963868 35
P.falciparum PF10_0232 810389   XP_001347516 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)