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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ADAMTS1, ADAM metallopeptidase with thrombospondin type 1 motif, 1
Sequence ID:NM_006988
Entrez Gene ID:9510
Ensembl ID:ENSG00000154734

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 28208607 - 28217388

NM_006988 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2220112820860728210596
201221872821075728210932
218823632821190528212080
236425502821219328212379
255128372821259428212880
283830052821331628213483
300631382821417628214308
313934852821465728215003
348646702821654328217727

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5266513Full LengthBC036515ADAM metallopeptidase with thrombospondin type 1 motif, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008919  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006988 NP_008919 Q9UHI8 TSP_1
Reprolysin
Pep_M12B_propep
ADAM_spacer1
ADAM_CR

Related Sequences

 
mRNAGenPeptSwissProt
AF060152 AAD48080 Q9UHI8
AF170084 AAF15317 Q9UHI8
AF207664 AAF23772 Q9UHI8
BC036515 AAH36515 Q8NE26
DQ108407 AAZ73034  
DQ896765 ABM87764  
EU176454 ABW03905  
AB037767 BAA92584 Q9UHI8
AK129873 BAC85245 Q6ZP79
AK314475 BAG37080 B2RB33
AL162080 CAB82413 Q9UHI8
BX647388 CAI46043 Q5HYL0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ADAMTS1 NP_008919 M.musculus Adamts1 11504 Gene Info NP_033751 83
R.norvegicus Adamts1 79252   NP_077376 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)