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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STMN3, stathmin-like 3
Sequence ID:NM_015894
Entrez Gene ID:50861
Ensembl ID:ENSG00000197457

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 62272452 - 62284731

NM_015894 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
116906227106062272749
169118826227346062273651
188320586227510862275283
205921546227556662275661
215522556228467962284779

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4124704Full LengthBC009381stathmin-like 3
4894236Full LengthBC025234stathmin-like 3
5502255IncompleteBC032527stathmin-like 3
6172183IncompleteBC056873stathmin-like 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056978  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015894 NP_056978 Q9NZ72 Stathmin

Related Sequences

 
mRNAGenPeptSwissProt
AF069709 AAD12730 Q9NZ72
BC009381 AAH09381 Q9NZ72
BC025234 AAH25234 Q9NZ72
DQ893121 ABM84047  
DQ896397 ABM87396  
AK074860 BAC11252 Q8NCA8
AK094112 BAG52817 Q9NZ72
AK298903 BAH12900 B7Z5G4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STMN3 NP_056978 M.musculus Stmn3 20262 Gene Info NP_033159 96
R.norvegicus Stmn3 29246   NP_077322 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)