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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. JTB, jumping translocation breakpoint
Sequence ID:NM_006694
Entrez Gene ID:10899
Ensembl ID:ENSG00000143543

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 153946987 - 153950160

NM_006694 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3567153946746153947310
568647153948301153948380
648730153949168153949250
731768153949451153949488
7691574153949645153950450

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820861Full LengthBC000499jumping translocation breakpoint
2823348Full LengthBC001667jumping translocation breakpoint
2823348Full LengthBC019277jumping translocation breakpoint
2901221Full LengthBC000996jumping translocation breakpoint
3050800Full LengthBC001363jumping translocation breakpoint
3626047Full LengthBC004239jumping translocation breakpoint

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006685  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006694 NP_006685 O76095 JTB

Related Sequences

 
mRNAGenPeptSwissProt
AF115850 AAD09822 O76095
AF131797 AAD20045 O76095
AF151056 AAF36142 O76095
BC000499 AAH00499 O76095
BC000996 AAH00996 O76095
BC001363 AAH01363 O76095
BC001667 AAH01667 O76095
BC004239 AAH04239 O76095
BC019277 AAH19277 O76095
BT007285 AAP35949 O76095
AB016488 BAA33731 O76095
AK312106 BAG35042 O76095
CR456985 CAG33266 O76095

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens JTB NP_006685 R.norvegicus Jtb 29439   NP_062086 87
M.musculus Jtb 23922 Gene Info NP_996807 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)