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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCCB, propionyl CoA carboxylase, beta polypeptide
Sequence ID:NM_000532
NM_001178014
RefSeqGene ID:NG_008939
Entrez Gene ID:5096
Ensembl ID:ENSG00000114054

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
PROPIONICACIDEMIAPCCA

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21-q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 135969199 - 136056737

 Exon Info From UCSC:
NM_000532
NM_001178014

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3919091Full LengthBC013768propionyl Coenzyme A carboxylase, beta polypeptide
6054692Full LengthBC053661propionyl Coenzyme A carboxylase, beta polypeptide
4284020IncompleteBC018013propionyl Coenzyme A carboxylase, beta polypeptide

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000523  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000532 NP_000523 P05166 EC 6.4.1.3 Carboxyl_trans
NM_001178014 NP_001171485      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M13573 AAA60036 P05166 EC 6.4.1.3
S67325 AAB28900 P05166 EC 6.4.1.3
AF217984 AAG17227 Q9HBR7  
BC013768 AAH13768 P05166 EC 6.4.1.3
BC018013 AAH18013 Q8WVH4  
BC053661 AAH53661 P05166 EC 6.4.1.3
JF432277 ADZ15494    
AB209009 BAD92246 Q59GV0  
AK295312 BAH12030 P05166 EC 6.4.1.3
AK302522 BAH13735 B7Z7U9  
AK303079 BAH13894 B7Z8A8  
X73424 CAA51825 P05166 EC 6.4.1.3
AL831978 CAD89898 Q86TD7  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCCB NP_001171485 M.musculus Pccb 66904 Gene Info NP_080111 93
R.norvegicus Pccb 24624   NP_058726 92
C.elegans pccb-1 180596   NP_741743 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)