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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NRXN1, neurexin 1
Sequence ID:NM_001135659
NM_004801
NM_138735
RefSeqGene ID:NG_011878
Entrez Gene ID:9378
Ensembl ID:ENSG00000179915

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p16.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 50145643 - 51255594

 Exon Info From UCSC:
NM_001135659
NM_004801
NM_138735

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007472Full LengthBC150247neurexin 1
40121982IncompleteBC125179neurexin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004792  NP_620072  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135659 NP_001129131    
NM_004801 NP_004792 Q9ULB1 EGF
Laminin_G_2
NM_138735 NP_620072   Laminin_G_1
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
BC046631 AAH46631 Q49A31
BC125179 AAI25180 A4FVB9
BC125180 AAI25181 Q08AH0
BC150247 AAI50248 A7E294
EF539882 ABS86974 Q9ULB1
AB011150 BAA25504 Q9ULB1
AB035356 BAA87821 Q9ULB1
AK295773 BAG58597 B4DIT5
BX647616 CAI46085 Q5HYI0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NRXN1 NP_001129131 R.norvegicus Nrxn1 60391   NP_068535 99
M.musculus Nrxn1 18189 Gene Info NP_064648 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)