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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GPCPD1, glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Sequence ID:NM_019593
Entrez Gene ID:56261
Ensembl ID:ENSG00000125772

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 5525086 - 5591664

 Exon Info From UCSC:
NM_019593

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4827346Full LengthBC027588hypothetical protein KIAA1434

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062539  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_019593 NP_062539 Q9NPB8 EC 3.1.4.2 CBM_20
GDPD

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC027588 AAH27588 Q9NPB8 EC 3.1.4.2
AK001947 BAA91994 Q9NPB8 EC 3.1.4.2
AB037855 BAA92672 Q9NPB8 EC 3.1.4.2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GPCPD1 NP_062539 M.musculus Gpcpd1 74182 Gene Info NP_001036136 93
R.norvegicus Gpcpd1 362219   NP_942074 91
D.melanogaster CG2818 33597   NP_608804 40
A.gambiae AgaP_AGAP009843 4578030   XP_553723 31
A.thaliana AT5G43300 834348   NP_199144 31
A.thaliana AT5G41080 834110   NP_974865 30
A.thaliana SRG3 821175   NP_566159 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)