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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHMP5, charged multivesicular body protein 5
Sequence ID:NM_001195536
NM_016410
Entrez Gene ID:51510
Ensembl ID:ENSG00000086065

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 33265047 - 33281510

Transcript StartTranscript EndChromosomal Start Chromosomal End
12693326487633265144
2703743326600733266111
3754213326785033267896
4225153327062033270713
5165873327114933271220
5886963327645333276561
6978093327811033278222
81015173328080633281513

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3961351Full LengthBC021168chromatin modifying protein 5
3996277Full LengthBC006974chromatin modifying protein 5
4044464Full LengthBC007457chromatin modifying protein 5
4094210Full LengthBC016698chromatin modifying protein 5
4134310Full LengthBC020796chromatin modifying protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057494  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195536 NP_001182465    
NM_016410 NP_057494 Q9NZZ3 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
AF132968 AAD27743 Q9NZZ3
AF161525 AAF29140 Q9NZZ3
AF229832 AAF42917 Q9NZZ3
AF275810 AAG23821 Q9NZZ3
BC006974 AAH06974 Q9NZZ3
BC007457 AAH07457 Q9NZZ3
BC016698 AAH16698 Q9NZZ3
BC020796 AAH20796 Q9NZZ3
BC021168 AAH21168 Q9NZZ3
DQ893179 ABM84105  
DQ896479 ABM87478  
DQ896480 ABM87479  
AK315455 BAG37842 Q9NZZ3
AK295744 BAG58578 Q9NZZ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHMP5 NP_057494 M.musculus Chmp5 76959 Gene Info NP_084090 99
R.norvegicus Chmp5 297995   NP_001020581 99
D.melanogaster CG6259 39964   NP_648997 64
A.gambiae AgaP_AGAP005100 1274775   XP_313976 64
C.elegans F41E6.9 179242   NP_505219 61
N.crassa NCU04541 3872131   XP_955981 49
A.thaliana VPS60.1 820233   NP_187675 49
A.thaliana VPS60.2 830364   NP_568143 48
S.pombe SPCC162.06c 2538774   NP_588238 44
S.cerevisiae VPS60 852097   NP_010774 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)