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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GNPDA1, glucosamine-6-phosphate deaminase 1
Sequence ID:NM_005471
Entrez Gene ID:10007
Ensembl ID:ENSG00000113552

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 141380238 - 141391606

NM_005471 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
191475141380237141381693
14761650141382652141382826
16511835141384496141384680
18362018141385708141385890
20192120141387363141387464
21212250141391476141391605
22512311141392559141392619

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3864091Full LengthBC012853glucosamine-6-phosphate deaminase 1
4242886Full LengthBC020769glucosamine-6-phosphate deaminase 1
4243999Full LengthBC022322glucosamine-6-phosphate deaminase 1
3503459IncompleteBC001717glucosamine-6-phosphate deaminase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005462  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005471 NP_005462 P46926 EC 3.5.99.6 Glucosamine_iso

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF029914 AAB84217 P46926 EC 3.5.99.6
AF048826 AAC05123 P46926 EC 3.5.99.6
BC012853 AAH12853 P46926 EC 3.5.99.6
BC020769 AAH20769 P46926 EC 3.5.99.6
BC022322 AAH22322 P46926 EC 3.5.99.6
HQ447787 ADQ32271    
D31766 BAA06544 P46926 EC 3.5.99.6
AK290686 BAF83375 A8K3S1  
AK022779 BAG51114 B3KMV2  
AK296452 BAH12360 B7Z3X4  
AJ002231 CAA05259 P46926 EC 3.5.99.6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GNPDA1 NP_005462 M.musculus Gnpda1 26384 Gene Info NP_036067 96
C.elegans T03F6.3 176760   NP_499758 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)