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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAD50, RAD50 homolog (S. cerevisiae)
Sequence ID:NM_005732
NM_133482
RefSeqGene ID:NG_021151
Entrez Gene ID:10111
Ensembl ID:ENSG00000113522

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 131892694 - 131978168


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020425Full LengthBC136436RAD50 homolog (S. cerevisiae)
3855371IncompleteBC108282RAD50 homolog (S. cerevisiae)
4385515IncompleteBC073850RAD50 homolog (S. cerevisiae)
5493315IncompleteBC062603RAD50 homolog (S. cerevisiae)
8860357IncompleteBC140005RAD50 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005723  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005732 NP_005723 Q92878 SMC_N
Rad50_zn_hook

Related Sequences

 
mRNAGenPeptSwissProt
U63139 AAB07119 Q92878
AF057299 AAD50325 Q92878
AF057300 AAD50326 Q92878
BC062603 AAH62603 Q92878
BC073850 AAH73850 Q32P42
Q92878
BC108282 AAI08283 Q32P42
BC136436 AAI36437 Q92878
BC140005 AAI40006 A5D6Y3
AK290597 BAF83286 A8K3I2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAD50 NP_005723 R.norvegicus Rad50 64012   NP_071582 92
M.musculus Rad50 19360 Gene Info NP_033038 92
A.thaliana RAD50 817756   NP_565733 33
A.gambiae AgaP_AGAP003676 1274350   XP_313457 32
D.melanogaster rad50 37564   NP_726199 31
S.pombe rad50 2541635   NP_594318 30
S.cerevisiae RAD50 855471   NP_014149 29
N.crassa NCU00901 3879967   XP_963818 29
P.falciparum PFF0285c 3885706   XP_966048 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta