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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB39B, RAB39B, member RAS oncogene family
Sequence ID:NM_171998
RefSeqGene ID:NG_012626
Entrez Gene ID:116442
Ensembl ID:ENSG00000155961

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MENTAL RETARDATION, X-LINKED 72 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 154487526 - 154489989

NM_171998 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
183005154487526154490513
30063499154493358154493851

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3900092Full LengthBC009714RAB39B, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_741995  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_171998 NP_741995 Q96DA2 Ras

Related Sequences

 
mRNAGenPeptSwissProt
BC009714 AAH09714 Q96DA2
AY052478 AAL12244 Q96DA2
AL834460 CAD39120 Q96DA2
AM393847 CAL38722  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB39B NP_741995 M.musculus Rab39b 67790 Gene Info NP_780331 100
A.gambiae AgaP_AGAP000433 1271812   XP_310666 63
C.elegans rab-39 183941   NP_495984 56
D.melanogaster Rab39 31684   NP_572405 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)