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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYP, synaptophysin
Sequence ID:NM_003179
RefSeqGene ID:NG_012532
Entrez Gene ID:6855
Ensembl ID:ENSG00000102003

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23-p11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 49045693 - 49056652

NM_003179 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1714874904426449045734
148818184904788949048219
181920104904972849049919
201122064905062249050817
220723314905417349054297
233223974905542649055491
239824494905660949056660

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5768012Full LengthBC064550synaptophysin
5178052IncompleteBC032385synaptophysin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003170  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003179 NP_003170 P08247 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC064550 AAH64550 P08247
HQ448085 ADQ32566  
AK313030 BAG35863 P08247
AK295524 BAH12095 B7Z359
AK315953 BAH14324 B7Z359
X06389 CAA29686 P08247

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYP NP_003170 R.norvegicus Syp 24804   NP_036796 96
M.musculus Syp 20977 Gene Info NP_033331 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)