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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CACNA1F, calcium channel, voltage-dependent, L type, alpha 1F subunit
Sequence ID:NM_001256789
NM_001256790
NM_005183
RefSeqGene ID:NG_009095
Entrez Gene ID:778
Ensembl ID:ENSG00000102001

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ALAND ISLAND EYE DISEASE 
CONE-ROD DYSTROPHY, X-LINKED, 3 
NIGHT BLINDNESS, CONGENITAL STATIONARY, X-LINKED, TYPE 2A 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 49061522 - 49089771


Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005174  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256789 NP_001243718    
NM_001256790 NP_001243719    
NM_005183 NP_005174 O60840 Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
AF067227 AAD03587 O95226
AF201304 AAF15290 O60840
JF701915 AED89557 F5CIQ9
AJ224874 CAA12175 O60840

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CACNA1F NP_005174 M.musculus Cacna1f 54652 Gene Info NP_062528 92
R.norvegicus Cacna1f 114493   NP_446153 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)