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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRUB2, TruB pseudouridine (psi) synthase homolog 2 (E. coli)
Sequence ID:NM_015679
Entrez Gene ID:26995
Ensembl ID:ENSG00000167112

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 131071381 - 131084709

NM_015679 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1759131071395131072153
760896131073165131073301
897969131073807131073879
9701051131076086131076167
10521113131077845131077906
11141188131079430131079504
11891320131083877131084008
13211439131084578131084696

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3138788Full LengthBC001457TruB pseudouridine (psi) synthase homolog 2 (E. coli)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015679 NP_056494 O95900  

Related Sequences

 
mRNAGenPeptSwissProt
AF131848 AAD20059 O95900
BC001457 AAH01457 O95900
DQ892156 ABM83082  
DQ895351 ABM86277  
AK001956 BAA92001 O95900
AK301986 BAH13601 B7Z7G5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRUB2 NP_056494 M.musculus Trub2 227682 Gene Info NP_663495 82
R.norvegicus LOC685694 685694   XP_001064878 75
A.gambiae AgaP_AGAP002077 1281037   XP_320970 35
D.melanogaster CG7849 35537   NP_610201 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)