Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CXCL11, chemokine (C-X-C motif) ligand 11
Sequence ID:NM_005409
Entrez Gene ID:6373
Ensembl ID:ENSG00000169248

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 76955389 - 76957206

NM_005409 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1211397695484176955968
114012127695619976956271
121313397695636876956494
134014937695707976957232

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3934139Full LengthBC005292chemokine (C-X-C motif) ligand 11
4096572Full LengthBC012532chemokine (C-X-C motif) ligand 11
5178174Full LengthBC110986chemokine (C-X-C motif) ligand 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005400  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005409 NP_005400 O14625 IL8

Related Sequences

 
mRNAGenPeptSwissProt
U59286 AAB17374 O14625
AF030514 AAC39775 O14625
AF002985 AAC51845 O14625
U66096 AAD38867 O14625
BC005292 AAH05292 O14625
BC012532 AAH12532 O14625
BC110986 AAI10987 O14625
AF352781 AAK52900 Q96KF0
BT006787 AAP35433 O14625
DQ895703 ABM86629  
EU176355 ABW03806  
Y15220 CAA75510 O14625

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXCL11 NP_005400 M.musculus Cxcl11 56066 Gene Info NP_062367 68
R.norvegicus Cxcl11 305236   NP_891997 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)