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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SF3B1, Splicing factor 3b, subunit 1, 155kDa
Sequence ID:NM_012433
NM_001005526
RefSeqGene ID:NG_032903
Entrez Gene ID:23451
Ensembl ID:ENSG00000115524

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q33.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 198256697 - 198299723

 Exon Info From UCSC:
NM_012433
NM_001005526

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3870300IncompleteBC064335splicing factor 3b, subunit 1, 155kDa
3908845IncompleteBC056155splicing factor 3b, subunit 1, 155kDa
3913474IncompleteBC015530splicing factor 3b, subunit 1, 155kDa
4250539IncompleteBC029418splicing factor 3b, subunit 1, 155kDa
5755022IncompleteBC046140splicing factor 3b, subunit 1, 155kDa
6043857IncompleteBC039020splicing factor 3b, subunit 1, 155kDa
6673680IncompleteBC107883splicing factor 3b, subunit 1, 155kDa
9094297IncompleteBC172216splicing factor 3b, subunit 1, 155kDa
9094298IncompleteBC172812splicing factor 3b, subunit 1, 155kDa
9094299IncompleteBC172813splicing factor 3b, subunit 1, 155kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001005526 NP_001005526    
NM_012433 NP_036565 O75533  

Related Sequences

 
mRNAGenPeptSwissProt
AF070540 AAC28633 O75533
AF054284 AAC97189 O75533
BC015530 AAH15530 A0JLT9
BC029418 AAH29418 A0PJH5
BC056155 AAH56155 Q7Z497
BC107883 AAI07884 Q32Q20
AK290470 BAF83159 A8K355
AK294851 BAG57955 B4DGZ4
AL137410 CAB70728 Q9NTB4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SF3B1 NP_036565 M.musculus Sf3b1 81898 Gene Info NP_112456 100
R.norvegicus Sf3b1 84486   NP_445878 100
A.gambiae AgaP_AGAP000178 1272086   XP_310958 82
D.melanogaster CG2807 33235   NP_608534 81
A.thaliana AT5G64270 836548   NP_201232 72
C.elegans T08A11.2 175549   NP_497853 70
N.crassa NCU03042 3880196   XP_964047 66
S.pombe prp10 2541619   NP_594538 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)