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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SSB, Sjogren syndrome antigen B (autoantigen La)
Sequence ID:NM_003142
RefSeqGene ID:NG_030640
Entrez Gene ID:6741
Ensembl ID:ENSG00000138385

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 170657470 - 170668265

 Exon Info From UCSC:
NM_003142

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3454454Full LengthBC001289Sjogren syndrome antigen B (autoantigen La)
4338551Full LengthBC020818Sjogren syndrome antigen B (autoantigen La)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003133  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003142 NP_003133 P05455 RRM_1
La

Related Sequences

 
mRNAGenPeptSwissProt
M20328 AAA36577 P05455
M35261 AAA36652 Q9UMH7
M35263 AAA36653 Q9UMH6
M35262 AAA36654 Q9UMH5
J04205 AAA51885 P05455
BC001289 AAH01289 P05455
BC020818 AAH20818 P05455
BT009862 AAP88864 P05455
DQ185046 ABD14426 Q2F832
DQ894459 ABM85385  
D28394 BAA05760  
AB451228 BAG70042 P05455
AB451351 BAG70165 B5BUB5
X13697 CAA31985 P05455
X14684 CAA32815 Q14730

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SSB NP_003133 M.musculus Ssb 20823 Gene Info NP_001103615 82
R.norvegicus Ssb 81783   NP_112381 82
D.melanogaster La 35305   NP_724257 39
A.gambiae AgaP_AGAP008952 1279920   XP_319705 37
C.elegans C44E4.4 172070   NP_491411 35
A.thaliana La1 829408   NP_567904 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta