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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CIR1, corepressor interacting with RBPJ, 1
Sequence ID:NM_199075
NM_004882
Entrez Gene ID:9541
Ensembl ID:ENSG00000138433

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 175213224 - 175260350

Transcript StartTranscript EndChromosomal Start Chromosomal End
191039175212879175213899
10401125175215387175215472
11261232175216346175216452
12331350175243650175243767
13511399175244929175244977
14001464175245378175245442
14651475175245531175245541
14761549175246431175246504
15501644175252412175252506
16451809175260278175260442

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5495320Full LengthBC046098CBF1 interacting corepressor
3910222IncompleteBC015040CBF1 interacting corepressor
4688373IncompleteBC031018CBF1 interacting corepressor
4827110IncompleteBC021175CBF1 interacting corepressor
5786766IncompleteBC038987CBF1 interacting corepressor

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004882 NP_004873 Q86X95  

Related Sequences

 
mRNAGenPeptSwissProt
U03644 AAA17853 Q86X95
AF098297 AAD05243 Q86X95
BC021175 AAH21175 Q86X95
BC031018 AAH31018 A0PJI7
BC038987 AAH38987 Q86X95
BC046098 AAH46098 Q86X95
AK292389 BAF85078 Q86X95

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CIR1 NP_004873 M.musculus Cir1 66935 Gene Info NP_080130 82
R.norvegicus Cir1 362149   NP_001007800 82
A.gambiae AgaP_AGAP004952 1275764   XP_315050 52
D.melanogaster CG6843 40062   NP_649072 46
C.elegans cir-1 172225   NP_491654 43
A.thaliana AT4G19190 827658   NP_193654 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)