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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CASQ1, Calsequestrin 1 (fast-twitch, skeletal muscle)
Sequence ID:NM_001231
Entrez Gene ID:844
Ensembl ID:ENSG00000143318

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 160160376 - 160171335

 Exon Info From UCSC:
NM_001231

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4338020Full LengthBC022289calsequestrin 1 (fast-twitch, skeletal muscle)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001222  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001231 NP_001222 P31415 Calsequestrin

Related Sequences

 
mRNAGenPeptSwissProt
S73775 AAB32063 P31415
BC022289 AAH22289 P31415
DQ891985 ABM82911  
DQ895175 ABM86101  
AK313250 BAG36060 P31415
AK300713 BAG62390 B4DUM8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CASQ1 NP_001222 R.norvegicus Casq1 686019   NP_001153066 96
M.musculus Casq1 12372 Gene Info NP_033943 95
C.elegans csq-1 181563   NP_510438 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)