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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARNT, aryl hydrocarbon receptor nuclear translocator
Sequence ID:NM_001197325
NM_001668
NM_178427
NM_178426
RefSeqGene ID:NG_028248
Entrez Gene ID:405
Ensembl ID:ENSG00000143437

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 150783334 - 150849055

 Exon Info From UCSC:
NM_001668
NM_178427

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5300334Full LengthBC060838aryl hydrocarbon receptor nuclear translocator
5555271IncompleteBC041121aryl hydrocarbon receptor nuclear translocator

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001659  NP_848514  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001197325 NP_001184254    
NM_001668 NP_001659 P27540 HLH
PAS
PAS_3
NM_178427 NP_848514   HLH
PAS
PAS_3

Related Sequences

 
mRNAGenPeptSwissProt
M69238 AAA51777 P27540
AF001307 AAC03365 O43392
BC060838 AAH60838 I6L9E7
HQ448538 ADQ33017  
AB209877 BAD93114 Q59ED4
AK223459 BAD97179 Q53F30
AK290177 BAF82866 P27540
AK291705 BAF84394 A8K6P0
AK293027 BAF85716 P27540
AK315812 BAF98703 B0AZM1
AK313780 BAG36518 B2R9H1
AK304772 BAG65527 B4E3L5
AL834279 CAD38953 P27540

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARNT NP_001659 M.musculus Arnt 11863 Gene Info NP_001032826 92
R.norvegicus Arnt 25242   NP_036912 91
C.elegans aha-1 172889   NP_492687 51
D.melanogaster tgo 41084   NP_731308 50
A.gambiae AgaP_AGAP009748 1279156   XP_318833 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta