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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC22B, SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)
Sequence ID:NM_004892
Entrez Gene ID:9554

Database Links

UniGeneEntrez GeneOMIMHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 145096482 - 145116622

NM_004892 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1215145096406145096620
216325145103907145104016
326486145109523145109683
487633145112372145112518
6341821145115734145116921

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051087Full LengthBC001364SEC22 vesicle trafficking protein homolog B (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004883  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004892 NP_004883 O75396 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
AF047442 AAC39893 O75396
BC001364 AAH01364 O75396
DQ892584 ABM83510  
DQ895801 ABM86727  
AK289875 BAF82564 O75396

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC22B NP_004883 R.norvegicus Sec22b 310710   NP_001020857 98
M.musculus Sec22b 20333 Gene Info NP_035472 98
A.gambiae AgaP_AGAP012717 1269056   XP_307637 58
D.melanogaster Sec22 31030   NP_569863 57
C.elegans F55A4.1 180456   NP_508198 49
A.thaliana SEC22 837737   NP_172653 48
S.cerevisiae SEC22 850973   NP_013370 40
S.pombe sec22 2540308   NP_596218 39
N.crassa NCU06708 3877050   XP_960888 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)