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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HPCA, hippocalcin
Sequence ID:NM_002143
Entrez Gene ID:3208
Ensembl ID:ENSG00000121905

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35-p34.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 33352093 - 33359463

NM_002143 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1193335209733352115
204183335447833354876
4195243335912433359229
52514053335936533360245

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3355354Full LengthBC001777hippocalcin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002134  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002143 NP_002134 P84074 efhand

Related Sequences

 
mRNAGenPeptSwissProt
BC001777 AAH01777 P84074
BT019750 AAV38555 Q5U068
BT019789 AAV38592 Q5U068
DQ426877 ABD90537 Q0QD43
EU832747 ACE87079  
EU832668 ACE87759  
D16593 BAA04019 P84074
AK313907 BAG36630 P84074

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HPCA NP_002134 R.norvegicus Hpca 29177   NP_058818 100
M.musculus Hpca 15444 Gene Info NP_034601 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)