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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EXOSC10, exosome component 10
Sequence ID:NM_001001998
NM_002685
Entrez Gene ID:5394
Ensembl ID:ENSG00000171824

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 11126677 - 11159886

 Exon Info From UCSC:
NM_001001998
NM_002685

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5420763Full LengthBC073788exosome component 10
5505500Full LengthBC039901exosome component 10
2819348IncompleteBC009908exosome component 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002676  NP_001001998  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001998 NP_001001998 Q01780 HRDC
3_5_exonuc
PMC2NT
NM_002685 NP_002676   HRDC
3_5_exonuc
PMC2NT

Related Sequences

 
mRNAGenPeptSwissProt
L01457 AAB59352 Q01780
BC009908 AAH09908 Q96G78
BC039901 AAH39901 Q01780
BC073788 AAH73788 Q01780
EU832705 ACE87037  
EU832630 ACE87721  
AB209236 BAD92473 Q59G73
AK294058 BAG57405 B4DFE4
AK296559 BAG59180 B4DKG8
X66113 CAA46904 Q01780

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EXOSC10 NP_001001998 M.musculus Exosc10 50912 Gene Info NP_057908 87
A.thaliana AT1G54440 841886   NP_175846 51
D.melanogaster Rrp6 41798   NP_001097795 40
A.gambiae AgaP_AGAP002300 1273667   XP_312669 39
A.thaliana AT5G35910 833577   NP_198440 35
C.elegans crn-3 3565889   NP_496283 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)