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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTCD1, pentatricopeptide repeat domain 1
Sequence ID:NM_015545
Entrez Gene ID:26024
Ensembl ID:ENSG00000106246

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 99014361 - 99036370

NM_015545 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
710289901675099017771
102912119902139799021579
121220339902241799023238
203421359902672599026826
213623549902721099027428
235524959903090099031040
249629749903241299032890
297530799903631499036418

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6645909Full LengthBC080580pentatricopeptide repeat domain 1
40011658Full LengthBC103495pentatricopeptide repeat domain 1
40011661Full LengthBC103502pentatricopeptide repeat domain 1
3356434IncompleteBC024042pentatricopeptide repeat domain 1
3453948IncompleteBC003688pentatricopeptide repeat domain 1
40011663IncompleteBC103661pentatricopeptide repeat domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056360  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001198879 NP_001185808    
NM_015545 NP_056360 O75127 PPR

Related Sequences

 
mRNAGenPeptSwissProt
BC003688 AAH03688 O75127
BC080580 AAH80580 O75127
BC103495 AAI03496 Q3ZB84
BC103502 AAI03503 O75127
BC103661 AAI03662 Q3SYP6
AB014532 BAA31607 O75127
AK291004 BAF83693 A4D273
AK001615 BAG50949 B3KMD7
AK295912 BAG58700 B4DJ38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)