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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDC4, syndecan 4
Sequence ID:NM_002999
Entrez Gene ID:6385
Ensembl ID:ENSG00000124145

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 43955762 - 43977064

NM_002999 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3121554395393043956054
215623544395900543959203
235524014396166243961708
240225404396442143964559
254126404397696443977063

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4690309Full LengthBC030805syndecan 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002990  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002999 NP_002990 P31431 Syndecan

Related Sequences

 
mRNAGenPeptSwissProt
BC030805 AAH30805 P31431
DQ890718 ABM81644  
DQ893898 ABM84824  
D13292 BAA02550 P31431
AK222695 BAD96415 P31431
AK223243 BAD96963 P31431
AK312507 BAG35408 P31431
AK303964 BAG64888 B4E1S6
X67016 CAA47406 P31431
CR542045 CAG46842 P31431
CR542074 CAG46871 P31431

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDC4 NP_002990 M.musculus Sdc4 20971 Gene Info NP_035651 82
R.norvegicus Sdc4 24771   NP_036781 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)