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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. AP3S2, adaptor-related protein complex 3, sigma 2 subunit
Sequence ID:NM_005829
NR_023361
NR_037582
Entrez Gene ID:10239
Ensembl ID:ENSG00000157823

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q26.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 90378432 - 90437209

NM_005829 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
250459037383190378874
504651539038084690380953
515452259041470690414777
522653379043175290431863
533854299043228090432371
543059349043711290437616

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959670Full LengthBC010020adaptor-related protein complex 3, sigma 2 subunit
3614033Full LengthBC002785adaptor-related protein complex 3, sigma 2 subunit
4139509IncompleteBC007773adaptor-related protein complex 3, sigma 2 subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005820  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005829 NP_005820 P59780 Clat_adaptor_s

Related Sequences

 
mRNAGenPeptSwissProt
BC002785 AAH02785 P59780
BC007773 AAH07773 Q6PK37
BC010020 AAH10020 P59780
DQ892982 ABM83908  
DQ896230 ABM87229  
AK222698 BAD96418 Q53H83
AK312467 BAG35374 B2R677
AK294712 BAG57864 B4DGQ3
X99459 CAA67824 P59780

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens AP3S2 NP_005820 M.musculus Ap3s2 11778 Gene Info NP_033812 100
R.norvegicus LOC683402 683402   NP_001108511 100
D.melanogaster or 43943   NP_536793 79
A.gambiae AgaP_AGAP007522 1269709   XP_308356 77
C.elegans aps-3 171691   NP_740780 75
A.thaliana AT3G50860 824250   NP_190655 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)