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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SUV420H1, suppressor of variegation 4-20 homolog 1 (Drosophila)
Sequence ID:NM_016028
NM_017635
Entrez Gene ID:51111
Ensembl ID:ENSG00000110066

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 67933792 - 67957541

 Exon Info From UCSC:
NM_016028
NM_017635

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40001704Full LengthBC104483suppressor of variegation 4-20 homolog 1 (Drosophila)
40001705Full LengthBC098121suppressor of variegation 4-20 homolog 1 (Drosophila)
40001706Full LengthBC103498suppressor of variegation 4-20 homolog 1 (Drosophila)
40001707Full LengthBC099714suppressor of variegation 4-20 homolog 1 (Drosophila)
4707576IncompleteBC012933suppressor of variegation 4-20 homolog 1 (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060105  NP_057112  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_016028 NP_057112     SET
NM_017635 NP_060105 Q4FZB7 EC 2.1.1.43 SET

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF151843 AAD34080 Q4FZB7 EC 2.1.1.43
AF264782 AAG36937 Q4FZB7 EC 2.1.1.43
BC002522 AAH02522 Q4FZB7 EC 2.1.1.43
BC012933 AAH12933 Q4FZB7 EC 2.1.1.43
BC065287 AAH65287 Q4FZB7 EC 2.1.1.43
BC087834 AAH87834 Q4FZB7 EC 2.1.1.43
BC098121 AAH98121 Q4FZB7 EC 2.1.1.43
BC099714 AAH99714 Q4FZB7 EC 2.1.1.43
BC103498 AAI03499 Q4FZB7 EC 2.1.1.43
BC104483 AAI04484 Q4FZB7 EC 2.1.1.43
AK000046 BAA90905 Q4FZB7 EC 2.1.1.43
AK299201 BAH12968 B7Z5N2  
AL512763 CAC21680 Q4FZB7 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SUV420H1 NP_060105 M.musculus Suv420h1 225888 Gene Info NP_001161357 88
R.norvegicus Suv420h1 361688   NP_001101982 88
A.gambiae AgaP_AGAP000042 3289600   XP_566387 63
C.elegans set-4 174045   NP_495272 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)