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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDLIM2, PDZ and LIM domain 2 (mystique)
Sequence ID:NM_021630
NM_176871
NM_198042
RefSeqGene ID:NG_030435
Entrez Gene ID:64236
Ensembl ID:ENSG00000120913

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 22436655 - 22451805

 Exon Info From UCSC:
NM_021630
NM_176871
NM_198042

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3959372Full LengthBC021556PDZ and LIM domain 2 (mystique)
4593207Full LengthBC071774PDZ and LIM domain 2 (mystique)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_932159  NP_067643  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021630 NP_067643 Q96JY6 LIM
PDZ
NM_176871 NP_789847    
NM_198042 NP_932159   PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AY007729 AAG16633 Q96JY6
BC021556 AAH21556 Q96JY6
BC071774 AAH71774 Q96JY6
AF289563 AAL55747 Q96JY6
AY070438 AAL65265 Q96JY6
AY217349 AAO45102 Q96JY6
DQ893664 ABM84590  
EU176702 ABW03503  
AK024498 BAB15788 Q96JY6
AK027800 BAB55378 Q96JY6
AK074031 BAB84857 Q8TET9
AK090432 BAC03413 Q8NF47
AK056748 BAG51802 B3KPU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDLIM2 NP_067643 M.musculus Pdlim2 213019 Gene Info NP_666090 80
R.norvegicus Pdlim2 290354   NP_001007623 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)