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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-DOA, Major histocompatibility complex, class II, DO alpha
Sequence ID:NM_002119
RefSeqGene ID:NG_012007
Entrez Gene ID:3111
Ensembl ID:ENSG00000204252

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 32971955 - 32973346

NM_002119 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
426603297196132974617
266127963297485632974991
279730783297508732975368
307933273297578932976037
332834853297723132977388

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4340975Full LengthBC013183major histocompatibility complex, class II, DO alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002110  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002119 NP_002110 P06340 MHC_II_alpha
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M38056 AAA35992 Q14535
M29335 AAA36253 Q30011
M26039 AAA59716 P06340
M31525 AAA60075 P06340
BC013183 AAH13183 P06340
AY947479 AAX49509 P06340
AY947480 AAX49510 P06340
AY947481 AAX49511 P06340
AY947482 AAX49512  
DQ891048 ABM81974  
DQ894226 ABM85152  
AK290714 BAF83403 P06340
AK313551 BAG36327 P06340
AK301404 BAG62939 B4DW77

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-DOA NP_002110 M.musculus H2-Oa 15001 Gene Info NP_032232 73
R.norvegicus RT1-DOa 24984   NP_898874 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)