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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LSM11, LSM11, U7 small nuclear RNA associated
Sequence ID:NM_173491
Entrez Gene ID:134353
Ensembl ID:ENSG00000155858

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 157170754 - 157183746

NM_173491 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1452157170754157171205
453592157178397157178536
593676157181011157181094
6772561157181861157183745

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8992165Full LengthBC126449LSM11, U7 small nuclear RNA associated
6584604IncompleteBC051353LSM11, U7 small nuclear RNA associated

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775762  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173491 NP_775762 P83369 LSM

Related Sequences

 
mRNAGenPeptSwissProt
BC051353 AAH51353 P83369
BC126449 AAI26450 P83369
AK095592 BAC04581 P83369

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LSM11 NP_775762 M.musculus Lsm11 72290 Gene Info NP_082461 89
R.norvegicus Lsm11 501688   XP_577085 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)