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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SETDB2, SET domain, bifurcated 2
Sequence ID:NM_031915
NM_001160308
Entrez Gene ID:83852
Ensembl ID:ENSG00000136169

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 50062559 - 50065997

 Exon Info From UCSC:
NM_031915
NM_001160308

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5266911Full LengthBC047434SET domain, bifurcated 2
3847827IncompleteBC017078SET domain, bifurcated 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_114121  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001160308 NP_001153780      
NM_031915 NP_114121 Q96T68 EC 2.1.1.43 SET
MBD
Pre-SET

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC017078 AAH17078 Q96T68 EC 2.1.1.43
BC047434 AAH47434 Q96T68 EC 2.1.1.43
AF334407 AAK38373 Q96T68 EC 2.1.1.43
AB209349 BAD92586 Q59FW0  
AL833957 CAD38807 Q8NDJ9  
AL831937 CAH56265 Q96T68 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SETDB2 NP_114121 R.norvegicus LOC100361710 100361710   XP_002728332 69
M.musculus Setdb2 239122 Gene Info NP_001074493 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)