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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM5C, Lysine (K)-specific demethylase 5C
Sequence ID:NM_004187
NM_001146702
RefSeqGene ID:NG_008085
Entrez Gene ID:8242
Ensembl ID:ENSG00000126012

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MENTAL RETARDATION, X-LINKED, SYNDROMIC, CLAES-JENSEN TYPE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.22-p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 53248026 - 53248273

 Exon Info From UCSC:
NM_004187
NM_001146702

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5492114Full LengthBC054499jumonji, AT rich interactive domain 1C
5762871IncompleteBC047751jumonji, AT rich interactive domain 1C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004178  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146702 NP_001140174    
NM_004187 NP_004178 P41229 PHD
ARID
JmjC
JmjN
zf-C5HC2
PLU-1

Related Sequences

 
mRNAGenPeptSwissProt
L25270 AAA61302 P41229
BC054499 AAH54499 P41229
EF613277 ABR13544 A6N6J7
EU446742 ABZ92271  
EU832220 ACE86790  
EU832126 ACE87476  
AK304732 BAG65494 P41229
Z29650 CAA82758 P41229

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM5C NP_004178 M.musculus Kdm5c 20591 Gene Info NP_038696 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)