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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C1RL, complement component 1, r subcomponent-like
Sequence ID:NM_016546
Entrez Gene ID:51279
Ensembl ID:ENSG00000139178

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 7247149 - 7261793

NM_016546 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2261472471467249758
2615268972522817252355
2690281572524967252621
2816300572544937254682
3006323472608467261074
3235339872617057261868

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062278Full LengthBC156780complement component 1, r subcomponent-like
30325873IncompleteBC062428complement component 1, r subcomponent-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057630  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016546 NP_057630 Q9NZP8 Trypsin
CUB

Related Sequences

 
mRNAGenPeptSwissProt
AF178985 AAF44349 Q9NZP8
BC062428 AAH62428 Q6P672
BC156780 AAI56781  
AK024084 BAB14819 Q9H804
AK222802 BAD96522 Q9NZP8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C1RL NP_057630 M.musculus C1rl 232371 Gene Info NP_851989 76
R.norvegicus C1rl 408246   NP_001002804 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)