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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TPM4, tropomyosin 4
Sequence ID:NM_001145160
NM_003290
RefSeqGene ID:NG_015841
Entrez Gene ID:7171
Ensembl ID:ENSG00000167460

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 16187372 - 16204563

 Exon Info From UCSC:
NM_001145160
NM_003290

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3637300Full LengthBC002827tropomyosin 4
4772340Full LengthBC067225tropomyosin 4
5582453Full LengthBC037576tropomyosin 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003281  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145160 NP_001138632    
NM_003290 NP_003281 P67936 Tropomyosin

Related Sequences

 
mRNAGenPeptSwissProt
M12127 AAA36774 P67936
AF186109 AAG17014  
BC002827 AAH02827 P67936
BC037576 AAH37576 P67936
BC067225 AAH67225 P67936
BT019634 AAV38440 P67936
AK023385 BAB14554 P67936
AK315076 BAG37545 P67936
AK300136 BAG61923 B4DTB1
AK301285 BAG62844 B4DVY2
X05276 CAA28888 P67936

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)