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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SUPT5H, suppressor of Ty 5 homolog (S. cerevisiae)
Sequence ID:NM_001111020
NM_001130824
NM_001130825
NM_003169
Entrez Gene ID:6829
Ensembl ID:ENSG00000196235

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39936211 - 39967310

 Exon Info From UCSC:
NM_001111020
NM_001130824
NM_001130825
NM_003169

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3532191Full LengthBC024203suppressor of Ty 5 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003160  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001111020 NP_001104490    
NM_001130824 NP_001124296    
NM_001130825 NP_001124297    
NM_003169 NP_003160 O00267 KOW
Supt5

Related Sequences

 
mRNAGenPeptSwissProt
U56402 AAC51102 O00267
AF040253 AAD02179 O00267
BC024203 AAH24203 O00267
DQ896795 ABM87794  
AB000516 BAA24075 O00267
AB209257 BAD92494 O00267
AK295137 BAG58160 B4DHJ8
AK296117 BAG58866 B4DJK4
AK302954 BAG64109 B4DZJ7
AK303480 BAG64516 B4E0Q4
Y12790 CAA73326 O00267

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SUPT5H NP_001104490 M.musculus Supt5h 20924 Gene Info NP_038704 98
A.gambiae AgaP_AGAP005021 4576284   XP_001231045 58
D.melanogaster Spt5 53442   NP_652610 57
C.elegans spt-5 178143   NP_502283 44
S.pombe spt5 2541916   NP_593191 40
A.thaliana GTA2 826391   NP_192575 38
A.thaliana AT2G34210 817982   NP_180968 36
N.crassa NCU06929 3875384   XP_959276 36
S.cerevisiae SPT5 854999   NP_013703 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)