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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STRN4, striatin, calmodulin binding protein 4
Sequence ID:NM_001039877
NM_013403
Entrez Gene ID:29888
Ensembl ID:ENSG00000090372

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 47223858 - 47249672

 Exon Info From UCSC:
NM_001039877
NM_013403

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4829172Full LengthBC034604striatin, calmodulin binding protein 4
3532918IncompleteBC004910striatin, calmodulin binding protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037535  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039877 NP_001034966    
NM_013403 NP_037535 Q9NRL3 WD40
Striatin

Related Sequences

 
mRNAGenPeptSwissProt
AF212940 AAF29527 Q9NRL3
BC004910 AAH04910 Q9NRL3
BC034604 AAH34604 Q9NRL3
AB209003 BAD92240 Q59GV6
AK056294 BAG51668 B3KPF6
AK297637 BAG60009 B4DMU7
AK298804 BAG60939 B4DQH7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STRN4 NP_001034966 M.musculus Strn4 97387 Gene Info NP_598550 95
R.norvegicus Strn4 308392   NP_001100950 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)