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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYT5, Synaptotagmin V
Sequence ID:NM_003180
Entrez Gene ID:6861
Ensembl ID:ENSG00000129990

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q|11p

Chromosomal Position (from UCSC)

Chromosomal Position:19: 55684463 - 55691469

NM_003180 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
296125568446855685051
6137465568588455686017
7478645568624955686366
86510325568653955686706
103312005568707655687243
120113205568737255687491
132114935568956355689735
149416175569033055690453
161818535569148455691719

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5768093Full LengthBC046157synaptotagmin V
5192810IncompleteBC033683synaptotagmin V

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003171  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003180 NP_003171 O00445 C2

Related Sequences

 
mRNAGenPeptSwissProt
BC033683 AAH33683 Q05BS5
BC046157 AAH46157 O00445
DQ090951 AAY99640 Q4FD32
AK125182 BAG54160 O00445
AK295337 BAH12036 B7Z300

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYT5 NP_003171 R.norvegicus Syt5 54309   NP_062223 91
M.musculus Syt5 53420 Gene Info NP_058604 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)