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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLRN2, Clarin 2
Sequence ID:NM_001079827
Entrez Gene ID:645104
Ensembl ID:ENSG00000249581

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4p15.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 17516787 - 17528727

NM_001079827 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13551751678717517141
3565351752448617524665
5368231752843917528726

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40133257Full LengthBC127863clarin 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001079827 NP_001073296 A0PK11  

Related Sequences

 
mRNAGenPeptSwissProt
BC127863 AAI27864 A0PK11

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLRN2 NP_001073296 R.norvegicus Clrn2 689515   XP_001071050 94
M.musculus Clrn2 624224 Gene Info NP_001156789 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)