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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS18, ribosomal protein S18
Sequence ID:NM_022551
Entrez Gene ID:6222
Ensembl ID:ENSG00000231500

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 33239872 - 33244286

NM_022551 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1483323985133239898
491473324040433240502
1482343324357333243659
2353363324374133243842
3374283324395233244043
4295423324416733244280

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4386992Full LengthBC106063ribosomal protein S18
8069292Full LengthBC101786ribosomal protein S18
8069294Full LengthBC101788ribosomal protein S18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_072045  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022551 NP_072045 P62269 Ribosomal_S13

Related Sequences

 
mRNAGenPeptSwissProt
BC101786 AAI01787 P62269
BC101788 AAI01789 P62269
BC106063 AAI06064 P62269
AY536376 AAT66049 Q5GGW2
X69150 CAB56794 P62269

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS18 NP_072045 M.musculus Rps18 20084 Gene Info NP_035426 100
R.norvegicus LOC100360679 100360679   XP_002727879 100
R.norvegicus Rps18 294282   NP_998722 100
D.melanogaster RpS18 37292   NP_476964 78
A.gambiae AgaP_AGAP010375 1272669   XP_311570 77
C.elegans rps-18 178408   NP_502794 76
N.crassa NCU00475 3872941   XP_956794 76
A.thaliana RPS18C 826569   NP_192718 74
A.thaliana AT1G34030 840300   NP_564434 74
A.thaliana PFL 838884   NP_173692 74
S.pombe rps1801 2540180   NP_596506 74
S.pombe rps1802 3361064   NP_588057 74
S.cerevisiae RPS18A 852061   NP_010738 72
S.cerevisiae RPS18B 854982   NP_013686 72
P.falciparum PF11_0272 810819   XP_001347943 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)