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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPOCD1, SPOC domain containing 1
Sequence ID:NM_144569
Entrez Gene ID:90853
Ensembl ID:ENSG00000134668

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 32256023 - 32259817

 Exon Info From UCSC:
NM_144569

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40038407Full LengthBC114430SPOC domain containing 1
4184930IncompleteBC039870SPOC domain containing 1
4299322IncompleteBC007910SPOC domain containing 1
5182172IncompleteBC029069SPOC domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_653170  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144569 NP_653170 Q6ZMY3 TFIIS_M
SPOC

Related Sequences

 
mRNAGenPeptSwissProt
BC007910 AAH07910 Q96I05
BC029069 AAH29069 Q05C62
BC039870 AAH39870 Q6ZMY3
BC114430 AAI14431 Q6ZMY3
AK058077 BAB71652 Q6ZMY3
AK091016 BAC03567 Q6ZMY3
AK097227 BAC04981 Q6ZMY3
AK131447 BAD18592 Q6ZMY3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPOCD1 NP_653170 M.musculus Spocd1 622480 Gene Info XP_003085477 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)