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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OBFC1, Oligonucleotide/oligosaccharide-binding fold containing 1
Sequence ID:NM_024928
Entrez Gene ID:79991
Ensembl ID:ENSG00000107960

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q24.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 105642312 - 105677427

NM_024928 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
55284105637319105642598
52855357105648829105648901
53585480105651887105652009
54815652105657305105657476
56535776105658634105658757
57775938105659819105659980
59396004105664848105664913
60056100105670284105670379
61016295105677219105677413
62966483105677857105678044

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3029792Full LengthBC017400oligonucleotide/oligosaccharide-binding fold containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079204  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024928 NP_079204 Q9H668 tRNA_anti

Related Sequences

 
mRNAGenPeptSwissProt
BC017400 AAH17400 Q9H668
HQ448216 ADQ32696  
AK026212 BAB15396 Q9H668

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OBFC1 NP_079204 R.norvegicus Obfc1 294025   NP_001011943 71
M.musculus Obfc1 108689 Gene Info NP_780569 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)