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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CIRBP, cold inducible RNA binding protein
Sequence ID:NM_001280
NR_023312
NR_023313
Entrez Gene ID:1153
Ensembl ID:ENSG00000099622

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 1270932 - 1272442

NM_001280 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114312692661269408
14425212709261271034
25335912711381271244
36049812713271271465
49958012715491271630
58165112719791272049
652139512724251273168

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822968Full LengthBC000403cold inducible RNA binding protein
2900585Full LengthBC000901cold inducible RNA binding protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001271  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001280 NP_001271 Q53XX5
Q14011
RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
AF021336 AAC51787 Q53XX5
Q14011
BC000403 AAH00403 Q53XX5
Q14011
BC000901 AAH00901 Q53XX5
Q14011
BT007210 AAP35874 Q53XX5
Q14011
EU176522 ABW03323  
EU176219 ABW03670  
D78134 BAA11212 Q53XX5
Q14011
AK128423 BAC87434 Q6ZR81
AK094781 BAG52929 B3KT17
AK304185 BAG65065 B4E2A3
AK304470 BAG65284 B4E2X2
AB451225 BAG70039 Q53XX5
AB451348 BAG70162 Q53XX5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CIRBP NP_001271 M.musculus Cirbp 12696 Gene Info NP_031731 95
R.norvegicus Cirbp 81825   NP_112409 95
A.thaliana CCR2 816705   NP_179760 48
A.thaliana CCR1 830082   NP_195637 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)