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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PROM1, Prominin 1
Sequence ID:NM_001145847
NM_006017
NM_001145848
NM_001145849
NM_001145850
NM_001145851
NM_001145852
RefSeqGene ID:NG_011696
Entrez Gene ID:8842
Ensembl ID:ENSG00000007062

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CONE-ROD DYSTROPHY 12 
MACULAR DYSTROPHY, RETINAL, 2 
RETINITIS PIGMENTOSA 41 
STARGARDT DISEASE 4 

Cytogenetic Location (from UniGene)

Cytogenetic Location:4p15.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 15969856 - 16077566

 Exon Info From UCSC:
NM_001145847
NM_006017
NM_001145848
NM_001145849
NM_001145850
NM_001145851
NM_001145852

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4644690Full LengthBC012089prominin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006008  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145847 NP_001139319    
NM_001145848 NP_001139320    
NM_001145849 NP_001139321    
NM_001145850 NP_001139322    
NM_001145851 NP_001139323    
NM_001145852 NP_001139324    
NM_006017 NP_006008 O43490 Prominin

Related Sequences

 
mRNAGenPeptSwissProt
AF027208 AAB92514 O43490
BC012089 AAH12089 O43490
AF507034 AAM33415 O43490
AF117225 AAO15307 O43490
AY449689 AAS19705 O43490
AY449690 AAS19706 O43490
AY449691 AAS19707 O43490
AY449692 AAS19708 O43490
AY449693 AAS19709 O43490
DQ895452 ABM86378  
EU176338 ABW03789  
AK315889 BAF98780 B0AZU8
AK027420 BAG51316 B3KNF4
AK027422 BAG51317 O43490
AK075411 BAG52133 B3KQS1
AM393353 CAL38231  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PROM1 NP_001139319 R.norvegicus Prom1 60357   NP_068519 62
M.musculus Prom1 19126 Gene Info NP_001157049 61
A.gambiae AgaP_AGAP005710 1276378   XP_315718 24
C.elegans F08B12.1 181330   NP_509907 23
D.melanogaster prominin-like 38372   NP_647770 22

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)